The warning message is probably something you can ignore: I've seen those
but they don't seem to cause any problem.
But, when you load VGAM via library(VGAM), you should see a rather long
ouput:
Creating a new generic function for "print" in "VGAM"
Creating a new generic function for "add1" in "VGAM"
Creating a new generic function for "drop1" in "VGAM"
Creating a new generic function for "coefficients" in
"VGAM"
Creating a new generic function for "deviance" in "VGAM"
Creating a new generic function for "df.residual" in
"VGAM"
Creating a new generic function for "effects" in "VGAM"
Creating a new generic function for "predict" in "VGAM"
Creating a new generic function for "residuals" in "VGAM"
Creating a new generic function for "model.matrix" in
"VGAM"
Creating a new generic function for "fitted.values" in
"VGAM"
Creating a new generic function for "fitted" in "VGAM"
Creating a new generic function for "resid" in "VGAM"
Attaching package 'VGAM':
The following object(s) are masked from package:splines :
bs ns
The following object(s) are masked from package:stats :
glm lm poly predict.glm predict.lm predict.mlm
The following object(s) are masked from package:base :
is.R jitter scale.default
if you don't see this, I wonder if you are using an older version of R.
Let me know if you are using R 2.0.1...
Kosuke
P.S. There is a graphical interface to Fink. It's called Fink Commander.
You can install g77/gcc from that.
On Sat, 22 Jan 2005 bjn3(a)duke.edu wrote:
> Appreciate the help very much.
>
> When I do install.packages() for VGAM, the output I get is pasted at the
> very bottom of the message (it's really long). The most noticeable
> problems are the repeated warnings of multiple definitions of symbol ______.
>
> Here's what library(VGAM) outputs:
>
> > library(VGAM)
> Loading required package: splines
> Loading required package: stats4
>
> I loaded the base Fink install, but that hasn't made a difference. It can
> add more specific packages, but I don't know which to install (I'm also not
> experienced at doing it from the command line).
>
> Best -
> Brendan
>
> PS I took this offline from the list, but I can send it there too if you
> want.
>
> --On Friday, January 21, 2005 5:00 PM -0500 Kosuke Imai
> <kimai(a)Princeton.Edu> wrote:
>
> > Hi Brendan,
> > What error do you get when you do install.packages() command for VGAM?
> > Alos, what do you get if you do library(VGAM)? In addition to the Apple
> > Developer Tools, you might need additional functionalities through fink.
> > http://fink.sourceforge.net/ let me know.
> > Kosuke
> >
> > ---------------------------------------------------------
> > Kosuke Imai Office: Corwin Hall 041
> > Assistant Professor Phone: 609-258-6601
> > Department of Politics eFax: 973-556-1929
> > Princeton University Email: kimai(a)Princeton.Edu
> > Princeton, NJ 08544-1012 http://www.princeton.edu/~kimai
> > ---------------------------------------------------------
> >
> > On Fri, 21 Jan 2005 bjn3(a)duke.edu wrote:
> >
> >> Hi -
> >>
> >> Sorry to bother the list with an installation problem, but I'm stymied.
> >> I've successfully installed R and Zelig on an iBook running Mac OS
> >> 10.3.7, but I can't get VGAM to install properly. After getting error
> >> messages, I installed the g77 compiler as suggested on the Zelig site.
> >> Then I still received error messages about a missing UNIX component of
> >> some kind, so I re-installed the Apple Developer Tools software that
> >> the g77 software apparently requires. But I still get this message
> >> when I try to run the mlogit demo:
> >>
> >>
> >> > z.out <- zelig(vote88 ~ pristr + othcok + othsocok,
> >> model = "mlogit", data = mexico)
> >> Error in eval(expr, envir, enclos) : couldn't find function "vglm"
> >>
> >>
> >> Any ideas? I've pasted the entire VGAM install sequence below for
> >> reference.
> >>
> >> PS When I try re-installing VGAM, it repeatedly gives me the message
> >> "ld: warning multiple definitions of symbol ______" I have also gotten
> >> various chmod warnings, but I assume those are the warnings mentioned
> >> in the installation guide that I can ignore.
> >>
> >> Thanks -
> >> Brendan
> >>
> >> --------
> >> Brendan Nyhan
> >> Graduate student
> >> Department of Political Science
> >> Duke University
> >>
> >>
> >>
> >> > install.packages("VGAM", CRAN="http://www.stat.auckland.ac.nz/~yee",
> >> + lib = "~/Library/R/library")
> >> trying URL `http://www.stat.auckland.ac.nz/~yee/src/contrib/PACKAGES'
> >> Content type `text/plain' length 468 bytes
> >> opened URL
> >> ==================================================
> >> downloaded 468 bytes
> >>
> >> trying URL
> >> `http://www.stat.auckland.ac.nz/~yee/src/contrib/VGAM_0.5-24.tar.gz'
> >> Content type `application/x-gzip' length 438079 bytes
> >> opened URL
> >> ==================================================
> >> downloaded 427Kb
> >>
> >> * Installing *source* package 'VGAM' ...
> >> ** libs
> >> g77 -fno-common -g -O2 -c fgam.f -o fgam.o
> >> gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
> >> -I/usr/local/include -fno-common -g -O2 -c gaut.c -o gaut.o
> >> g77 -fno-common -g -O2 -c lms.f -o lms.o
> >> gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
> >> -I/usr/local/include -fno-common -g -O2 -c mux.c -o mux.o
> >> g77 -fno-common -g -O2 -c rgam.f -o rgam.o
> >> g77 -fno-common -g -O2 -c tyeepolygamma.f -o tyeepolygamma.o
> >> g77 -fno-common -g -O2 -c vcall2.f -o vcall2.o
> >> g77 -fno-common -g -O2 -c veigen.f -o veigen.o
> >> g77 -fno-common -g -O2 -c vgam.f -o vgam.o
> >> g77 -fno-common -g -O2 -c vlinpack1.f -o vlinpack1.o
> >> g77 -fno-common -g -O2 -c vlinpack2.f -o vlinpack2.o
> >> g77 -fno-common -g -O2 -c vlinpack3.f -o vlinpack3.o
> >> g77 -fno-common -g -O2 -c vmux.f -o vmux.o
> >> g77 -fno-common -g -O2 -c zeta.f -o zeta.o
> >> gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o
> >> VGAM.so fgam.o gaut.o lms.o mux.o rgam.o tyeepolygamma.o vcall2.o
> >> veigen.o vgam.o vlinpack1.o vlinpack2.o vlinpack3.o vmux.o zeta.o
> >> -L/usr/local/lib -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2
> >> -L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin
> >> -lg2c -lSystem -lcc_dynamic -framework R
> >> ld: warning multiple definitions of symbol _xerbla_
> >> /Library/Frameworks/R.framework/R(print.lo) definition of _xerbla_
> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/ve
> >> cLi b.framework/Versions/A/libBLAS.dylib(single module) definition of
> >> _xerbla_ ld: warning multiple definitions of symbol _crc32
> >> /Library/Frameworks/R.framework/R(crc32.lo) definition of _crc32
> >> /usr/lib/libz.1.dylib(crc32.o) definition of _crc32
> >> ld: warning multiple definitions of symbol _get_crc_table
> >> /Library/Frameworks/R.framework/R(crc32.lo) definition of _get_crc_table
> >> /usr/lib/libz.1.dylib(crc32.o) definition of _get_crc_table
> >> ld: warning multiple definitions of symbol _deflate
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of _deflate
> >> /usr/lib/libz.1.dylib(deflate.o) definition of _deflate
> >> ld: warning multiple definitions of symbol _deflateCopy
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateCopy
> >> /usr/lib/libz.1.dylib(deflate.o) definition of _deflateCopy
> >> ld: warning multiple definitions of symbol _deflateReset
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateReset
> >> /usr/lib/libz.1.dylib(deflate.o) definition of _deflateReset
> >> ld: warning multiple definitions of symbol _deflateSetDictionary
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of
> >> _deflateSetDictionary
> >> /usr/lib/libz.1.dylib(deflate.o) definition of _deflateSetDictionary
> >> ld: warning multiple definitions of symbol _deflateInit2_
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of
> >> _deflateInit2_ /usr/lib/libz.1.dylib(deflate.o) definition of
> >> _deflateInit2_
> >> ld: warning multiple definitions of symbol _deflateEnd
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateEnd
> >> /usr/lib/libz.1.dylib(deflate.o) definition of _deflateEnd
> >> ld: warning multiple definitions of symbol _deflateParams
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of
> >> _deflateParams /usr/lib/libz.1.dylib(deflate.o) definition of
> >> _deflateParams
> >> ld: warning multiple definitions of symbol _deflateInit_
> >> /Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateInit_
> >> /usr/lib/libz.1.dylib(deflate.o) definition of _deflateInit_
> >> ld: warning multiple definitions of symbol _zError
> >> /Library/Frameworks/R.framework/R(zutil.lo) definition of _zError
> >> /usr/lib/libz.1.dylib(zutil.o) definition of _zError
> >> ld: warning multiple definitions of symbol _zlibVersion
> >> /Library/Frameworks/R.framework/R(zutil.lo) definition of _zlibVersion
> >> /usr/lib/libz.1.dylib(zutil.o) definition of _zlibVersion
> >> ld: warning multiple definitions of symbol _inflateEnd
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateEnd
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflateEnd
> >> ld: warning multiple definitions of symbol _inflateSync
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateSync
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflateSync
> >> ld: warning multiple definitions of symbol _inflateSyncPoint
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of
> >> _inflateSyncPoint
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflateSyncPoint
> >> ld: warning multiple definitions of symbol _inflate
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of _inflate
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflate
> >> ld: warning multiple definitions of symbol _inflateSetDictionary
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of
> >> _inflateSetDictionary
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflateSetDictionary
> >> ld: warning multiple definitions of symbol _inflateInit2_
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of
> >> _inflateInit2_ /usr/lib/libz.1.dylib(inflate.o) definition of
> >> _inflateInit2_
> >> ld: warning multiple definitions of symbol _inflateReset
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateReset
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflateReset
> >> ld: warning multiple definitions of symbol _inflateInit_
> >> /Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateInit_
> >> /usr/lib/libz.1.dylib(inflate.o) definition of _inflateInit_
> >> ld: warning multiple definitions of symbol _adler32
> >> /Library/Frameworks/R.framework/R(adler32.lo) definition of _adler32
> >> /usr/lib/libz.1.dylib(adler32.o) definition of _adler32
> >> ld: warning multiple definitions of symbol _BC
> >> /Library/Frameworks/R.framework/Versions/2.0.1/Resources/lib/libreadline
> >> .4. 3.dylib(terminal.so) definition of _BC
> >> /usr/lib/libncurses.5.dylib(lib_termcap.o) definition of _BC
> >> ld: warning multiple definitions of symbol _UP
> >> /Library/Frameworks/R.framework/Versions/2.0.1/Resources/lib/libreadline
> >> .4. 3.dylib(terminal.so) definition of _UP
> >> /usr/lib/libncurses.5.dylib(lib_termcap.o) definition of _UP
> >> ld: warning multiple definitions of symbol _PC
> >> /Library/Frameworks/R.framework/Versions/2.0.1/Resources/lib/libreadline
> >> .4. 3.dylib(terminal.so) definition of _PC
> >> /usr/lib/libncurses.5.dylib(lib_tputs.o) definition of _PC
> >> ld: warning multiple definitions of symbol _gzeof
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzeof
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzeof
> >> ld: warning multiple definitions of symbol _gzclose
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzclose
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzclose
> >> ld: warning multiple definitions of symbol _gzdopen
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzdopen
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzdopen
> >> ld: warning multiple definitions of symbol _gzerror
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzerror
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzerror
> >> ld: warning multiple definitions of symbol _gzflush
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzflush
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzflush
> >> ld: warning multiple definitions of symbol _gzgetc
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzgetc
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzgetc
> >> ld: warning multiple definitions of symbol _gzgets
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzgets
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzgets
> >> ld: warning multiple definitions of symbol _gzopen
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzopen
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzopen
> >> ld: warning multiple definitions of symbol _gzprintf
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzprintf
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzprintf
> >> ld: warning multiple definitions of symbol _gzputc
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzputc
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzputc
> >> ld: warning multiple definitions of symbol _gzputs
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzputs
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzputs
> >> ld: warning multiple definitions of symbol _gzread
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzread
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzread
> >> ld: warning multiple definitions of symbol _gzrewind
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzrewind
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzrewind
> >> ld: warning multiple definitions of symbol _gzseek
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzseek
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzseek
> >> ld: warning multiple definitions of symbol _gzsetparams
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzsetparams
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzsetparams
> >> ld: warning multiple definitions of symbol _gztell
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gztell
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gztell
> >> ld: warning multiple definitions of symbol _gzwrite
> >> /Library/Frameworks/R.framework/R(gzio.lo) definition of _gzwrite
> >> /usr/lib/libz.1.dylib(gzio.o) definition of _gzwrite
> >> ** R
> >> ** data
> >> ** demo
> >> ** help
> >> >>> Building/Updating help pages for package 'VGAM'
> >> Formats: text html latex example
> >> AA.Aa.aa text html latex example
> >> AB.Ab.aB.ab text html latex example
> >> AB.Ab.aB.ab2 text html latex example
> >> ABO text html latex example
> >> BratUC text html latex example
> >> Coef.qrrvglm-class text html latex example
> >> Coef.qrrvglm text html latex example
> >> Coef.rrvglm-class text html latex example
> >> Coef.rrvglm text html latex example
> >> DagumUC text html latex example
> >> FiskUC text html latex example
> >> G1G2G3 text html latex example
> >> InvlomaxUC text html latex example
> >> InvparalogisticUC text html latex example
> >> LognormalUC text html latex example
> >> LomaxUC text html latex example
> >> MNSs text html latex example
> >> ParalogisticUC text html latex example
> >> SinmadUC text html latex example
> >> acat text html latex example
> >> auuc text html latex example
> >> beta2 text html latex example
> >> betaII text html latex example
> >> binom2.or text html latex example
> >> binom2.rho text html latex example
> >> binomialff text html latex example
> >> biplot.rrvglm text html latex example
> >> bminz text html latex example
> >> brat text html latex example
> >> bratt text html latex example
> >> cdf.lmscreg text html latex example
> >> cgo text html latex example
> >> chest text html latex example
> >> chisq text html latex example
> >> cloglog text html latex example
> >> coalminers text html latex example
> >> cratio text html latex example
> >> cumulative text html latex example
> >> dagum text html latex example
> >> deplot.lmscreg text html latex example
> >> dhzeta text html latex example
> >> dirichlet text html latex example
> >> dzipois text html latex example
> >> egev text html latex example
> >> enzyme text html latex example
> >> exponential text html latex example
> >> fisherz text html latex example
> >> fisk text html latex example
> >> genbetaII text html latex example
> >> genpoisson text html latex example
> >> geometric text html latex example
> >> get.smart text html latex example
> >> get.smart.prediction text html latex example
> >> gev text html latex example
> >> gew text html latex example
> >> gpd text html latex example
> >> grc text html latex example
> >> gumbel.block text html latex example
> >> hspider text html latex example
> >> hunua text html latex example
> >> hzeta text html latex example
> >> identity text html latex example
> >> inverse text html latex example
> >> invlomax text html latex example
> >> invparalogistic text html latex example
> >> lgammaff text html latex example
> >> lms.bcg text html latex example
> >> lms.bcn text html latex example
> >> lms.yjn text html latex example
> >> logc text html latex example
> >> loge text html latex example
> >> logff text html latex example
> >> logit text html latex example
> >> loglog text html latex example
> >> lognormal text html latex example
> >> lognormal3 text html latex example
> >> lomax text html latex example
> >> lvplot.qrrvglm text html latex example
> >> lvplot.rrvglm text html latex example
> >> micmen text html latex example
> >> multinomial text html latex example
> >> negbin.mu text html latex example
> >> normal1 text html latex example
> >> ogev text html latex example
> >> oxtemp text html latex example
> >> paralogistic text html latex example
> >> persp.qrrvglm text html latex example
> >> plot.deplot.lmscreg text html latex example
> >> plot.qrrvglm text html latex example
> >> plot.qtplot.lmscreg text html latex example
> >> plot.vgam text html latex example
> >> plot.vgam.control text html latex example
> >> pneumo text html latex example
> >> poissonff text html latex example
> >> positive.binomial text html latex example
> >> positive.poisson text html latex example
> >> probit text html latex example
> >> put.smart text html latex example
> >> qrrvglm.control text html latex example
> >> qtplot.lmscreg text html latex example
> >> quasibinomialff text html latex example
> >> quasipoissonff text html latex example
> >> rdiric text html latex example
> >> rhobit text html latex example
> >> rig text html latex example
> >> rpospois text html latex example
> >> rrar text html latex example
> >> rrvglm-class text html latex example
> >> rrvglm text html latex example
> >> rrvglm.control text html latex example
> >> rrvglm.optim.control text html latex
> >> s text html latex example
> >> setup.smart text html latex example
> >> simplex text html latex example
> >> sinmad text html latex example
> >> smart.expression text html latex example
> >> smart.mode.is text html latex example
> >> smartpred text html latex example
> >> sratio text html latex example
> >> studentt text html latex example
> >> tanl text html latex example
> >> trplot.qrrvglm text html latex example
> >> usagrain text html latex example
> >> vcov.qrrvglm text html latex example
> >> venice text html latex example
> >> vgam-class text html latex example
> >> vgam text html latex example
> >> vgam.control text html latex example
> >> vglm-class text html latex example
> >> vglm text html latex example
> >> vglm.control text html latex example
> >> vglmff-class text html latex example
> >> vsmooth.spline text html latex example
> >> waitakere text html latex example
> >> weibull text html latex example
> >> wrapup.smart text html latex example
> >> yip88 text html latex example
> >> zipbipp text html latex example
> >> zipoissonX text html latex example
> >> * DONE (VGAM)
> >>
> >> -
> >> Zelig Mailing List, served by Harvard-MIT Data Center
> >> Send messages: zelig(a)latte.harvard.edu
> >> [un]subscribe Options: http://lists.hmdc.harvard.edu/?info=zelig
> >> Zelig program information: http://gking.harvard.edu/zelig/
> >>
> >
>
>
>
>
>
>
>
-
Zelig Mailing List, served by Harvard-MIT Data Center
Send messages: zelig(a)latte.harvard.edu
[un]subscribe Options: http://lists.hmdc.harvard.edu/?info=zelig
Zelig program information: http://gking.harvard.edu/zelig/
Hi -
Sorry to bother the list with an installation problem, but I'm stymied.
I've successfully installed R and Zelig on an iBook running Mac OS 10.3.7,
but I can't get VGAM to install properly. After getting error messages, I
installed the g77 compiler as suggested on the Zelig site. Then I still
received error messages about a missing UNIX component of some kind, so I
re-installed the Apple Developer Tools software that the g77 software
apparently requires. But I still get this message when I try to run the
mlogit demo:
> z.out <- zelig(vote88 ~ pristr + othcok + othsocok,
model = "mlogit", data = mexico)
Error in eval(expr, envir, enclos) : couldn't find function "vglm"
Any ideas? I've pasted the entire VGAM install sequence below for
reference.
PS When I try re-installing VGAM, it repeatedly gives me the message "ld:
warning multiple definitions of symbol ______" I have also gotten various
chmod warnings, but I assume those are the warnings mentioned in the
installation guide that I can ignore.
Thanks -
Brendan
--------
Brendan Nyhan
Graduate student
Department of Political Science
Duke University
> install.packages("VGAM", CRAN="http://www.stat.auckland.ac.nz/~yee",
+ lib = "~/Library/R/library")
trying URL `http://www.stat.auckland.ac.nz/~yee/src/contrib/PACKAGES'
Content type `text/plain' length 468 bytes
opened URL
==================================================
downloaded 468 bytes
trying URL
`http://www.stat.auckland.ac.nz/~yee/src/contrib/VGAM_0.5-24.tar.gz'
Content type `application/x-gzip' length 438079 bytes
opened URL
==================================================
downloaded 427Kb
* Installing *source* package 'VGAM' ...
** libs
g77 -fno-common -g -O2 -c fgam.f -o fgam.o
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/usr/local/include -fno-common -g -O2 -c gaut.c -o gaut.o
g77 -fno-common -g -O2 -c lms.f -o lms.o
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/usr/local/include -fno-common -g -O2 -c mux.c -o mux.o
g77 -fno-common -g -O2 -c rgam.f -o rgam.o
g77 -fno-common -g -O2 -c tyeepolygamma.f -o tyeepolygamma.o
g77 -fno-common -g -O2 -c vcall2.f -o vcall2.o
g77 -fno-common -g -O2 -c veigen.f -o veigen.o
g77 -fno-common -g -O2 -c vgam.f -o vgam.o
g77 -fno-common -g -O2 -c vlinpack1.f -o vlinpack1.o
g77 -fno-common -g -O2 -c vlinpack2.f -o vlinpack2.o
g77 -fno-common -g -O2 -c vlinpack3.f -o vlinpack3.o
g77 -fno-common -g -O2 -c vmux.f -o vmux.o
g77 -fno-common -g -O2 -c zeta.f -o zeta.o
gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o VGAM.so
fgam.o gaut.o lms.o mux.o rgam.o tyeepolygamma.o vcall2.o veigen.o vgam.o
vlinpack1.o vlinpack2.o vlinpack3.o vmux.o zeta.o -L/usr/local/lib
-L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2
-L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin
-lg2c -lSystem -lcc_dynamic -framework R
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ld: warning multiple definitions of symbol _zError
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ld: warning multiple definitions of symbol _zlibVersion
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ld: warning multiple definitions of symbol _inflateEnd
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ld: warning multiple definitions of symbol _inflateSyncPoint
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ld: warning multiple definitions of symbol _inflate
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ld: warning multiple definitions of symbol _BC
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3.dylib(terminal.so) definition of _BC
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ld: warning multiple definitions of symbol _UP
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3.dylib(terminal.so) definition of _UP
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ld: warning multiple definitions of symbol _PC
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ld: warning multiple definitions of symbol _gzeof
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzeof
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ld: warning multiple definitions of symbol _gzclose
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ld: warning multiple definitions of symbol _gzdopen
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ld: warning multiple definitions of symbol _gzgetc
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ld: warning multiple definitions of symbol _gzgets
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ld: warning multiple definitions of symbol _gzopen
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ld: warning multiple definitions of symbol _gzprintf
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ld: warning multiple definitions of symbol _gzputc
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ld: warning multiple definitions of symbol _gzputs
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ld: warning multiple definitions of symbol _gzread
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ld: warning multiple definitions of symbol _gztell
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** R
** data
** demo
** help
>>> Building/Updating help pages for package 'VGAM'
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* DONE (VGAM)
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Hi!
I'm still a bit (quite) confused about the use of zelig, method "mlogit"
trying to work 'through the given example (but with my own data) I would like to use the ternaryplot function from vcd, but plot also the intermediary categories
I have got the object z.out a
x.weak<-setx(z.out, v1=1)
x.int1<-setx(z.out, v1=2)
x.int2<-setx(z.out, v1=3)
x.strong<-setx(z.out, v1=4)
>From the example:
s.out <- sim(z.out, x = x.strong, x1 = x.weak)
ev.weak <- s.out$qi$ev + s.out$qi$fd
ternaryplot(s.out$qi$ev, pch = 20, col = "gray50", main = "Y and v1");
ternarypoints(ev.weak, pch = 20, col = "black")
- works fine!
how do I get the intermediary points on the plot? does teh following make sense?
ternaryplot(s.out$qi$ev, pch = ".", col = "gray50", main = "dependances OPARS et DMST manger");ternarypoints(ev.weak, pch = ".", col = "black")
ev.weak1 <- s.out1$qi$ev + s.out1$qi$fd
ev.weak21 <- s.out2$qi$ev + s.out2$qi$fd
ternarypoints(ev.weak2, pch = ".", col = "red")
ternarypoints(ev.weak1, pch = ".", col = "blue")
Now, moreover if my response has more than 3 levels have you a suggestion of how to plot the regression results?
Anne
PS I'm sorry but I'm new to zelig AND polytomous logistic regression!
----------------------------------------------------
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: anne.piotet(a)m-td.com
---------------------------------------------------
M-TD Modelling and Technology Development
PSE-C
CH-1015 Lausanne
Switzerland
Tel: +41 21 693 83 98
Fax: +41 21 646 41 33
--------------------------------------------------
I have a question with the use of polytomous logistic regression (method "mlogit")
trying to work down on a "real lifed ta " the doc example I have set
z.out <- zelig(OPARSn ~ mangern+lavern+habillern+deshabn+entpersn+contvesn+contanan
+toiletn+memoiren+orientatn+jugementn+soccupern,
model = "mlogit", data=heb)
where heb$OPARSn is polytomous (values 1:13) . that seems to work OK
however trying
> x.weak <- setx(z.out,mangern= 1) # 1 is the minimum of mangern
Error in seq.Date(along = object) : `from' must be specified # ??? I do not have a date object
or
>x.weak <- setx(z.out,heb$mangern= 1)
"syntax error" (it is just a copy/paste from the example???)
Any idea?
Tanks a lot
Anne
----------------------------------------------------
Anne Piotet
Tel: +41 79 359 83 32 (mobile)
Email: anne.piotet(a)m-td.com
---------------------------------------------------
M-TD Modelling and Technology Development
PSE-C
CH-1015 Lausanne
Switzerland
Tel: +41 21 693 83 98
Fax: +41 21 646 41 33
--------------------------------------------------
