Hi Brendan,
What error do you get when you do install.packages() command for VGAM?
Alos, what do you get if you do library(VGAM)? In addition to the Apple
Developer Tools, you might need additional functionalities through fink.
http://fink.sourceforge.net/ let me know.
Kosuke
---------------------------------------------------------
Kosuke Imai Office: Corwin Hall 041
Assistant Professor Phone: 609-258-6601
Department of Politics eFax: 973-556-1929
Princeton University Email: kimai(a)Princeton.Edu
Princeton, NJ 08544-1012
http://www.princeton.edu/~kimai
---------------------------------------------------------
On Fri, 21 Jan 2005 bjn3(a)duke.edu wrote:
Hi -
Sorry to bother the list with an installation problem, but I'm stymied.
I've successfully installed R and Zelig on an iBook running Mac OS 10.3.7,
but I can't get VGAM to install properly. After getting error messages, I
installed the g77 compiler as suggested on the Zelig site. Then I still
received error messages about a missing UNIX component of some kind, so I
re-installed the Apple Developer Tools software that the g77 software
apparently requires. But I still get this message when I try to run the
mlogit demo:
z.out <- zelig(vote88 ~ pristr + othcok +
othsocok,
model = "mlogit", data = mexico)
Error in eval(expr, envir, enclos) : couldn't find function "vglm"
Any ideas? I've pasted the entire VGAM install sequence below for
reference.
PS When I try re-installing VGAM, it repeatedly gives me the message "ld:
warning multiple definitions of symbol ______" I have also gotten various
chmod warnings, but I assume those are the warnings mentioned in the
installation guide that I can ignore.
Thanks -
Brendan
--------
Brendan Nyhan
Graduate student
Department of Political Science
Duke University
install.packages("VGAM",
CRAN="http://www.stat.auckland.ac.nz/~yee",
+ lib =
"~/Library/R/library")
trying URL `http://www.stat.auckland.ac.nz/~yee/src/contrib/PACKAGES'
Content type `text/plain' length 468 bytes
opened URL
==================================================
downloaded 468 bytes
trying URL
`http://www.stat.auckland.ac.nz/~yee/src/contrib/VGAM_0.5-24.tar.gz'
Content type `application/x-gzip' length 438079 bytes
opened URL
==================================================
downloaded 427Kb
* Installing *source* package 'VGAM' ...
** libs
g77 -fno-common -g -O2 -c fgam.f -o fgam.o
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/usr/local/include -fno-common -g -O2 -c gaut.c -o gaut.o
g77 -fno-common -g -O2 -c lms.f -o lms.o
gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/usr/local/include -fno-common -g -O2 -c mux.c -o mux.o
g77 -fno-common -g -O2 -c rgam.f -o rgam.o
g77 -fno-common -g -O2 -c tyeepolygamma.f -o tyeepolygamma.o
g77 -fno-common -g -O2 -c vcall2.f -o vcall2.o
g77 -fno-common -g -O2 -c veigen.f -o veigen.o
g77 -fno-common -g -O2 -c vgam.f -o vgam.o
g77 -fno-common -g -O2 -c vlinpack1.f -o vlinpack1.o
g77 -fno-common -g -O2 -c vlinpack2.f -o vlinpack2.o
g77 -fno-common -g -O2 -c vlinpack3.f -o vlinpack3.o
g77 -fno-common -g -O2 -c vmux.f -o vmux.o
g77 -fno-common -g -O2 -c zeta.f -o zeta.o
gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o VGAM.so
fgam.o gaut.o lms.o mux.o rgam.o tyeepolygamma.o vcall2.o veigen.o vgam.o
vlinpack1.o vlinpack2.o vlinpack3.o vmux.o zeta.o -L/usr/local/lib
-L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2
-L/usr/local/lib/gcc/powerpc-apple-darwin6.8/3.4.2/../../.. -lfrtbegin
-lg2c -lSystem -lcc_dynamic -framework R
ld: warning multiple definitions of symbol _xerbla_
/Library/Frameworks/R.framework/R(print.lo) definition of _xerbla_
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLi
b.framework/Versions/A/libBLAS.dylib(single module) definition of _xerbla_
ld: warning multiple definitions of symbol _crc32
/Library/Frameworks/R.framework/R(crc32.lo) definition of _crc32
/usr/lib/libz.1.dylib(crc32.o) definition of _crc32
ld: warning multiple definitions of symbol _get_crc_table
/Library/Frameworks/R.framework/R(crc32.lo) definition of _get_crc_table
/usr/lib/libz.1.dylib(crc32.o) definition of _get_crc_table
ld: warning multiple definitions of symbol _deflate
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflate
/usr/lib/libz.1.dylib(deflate.o) definition of _deflate
ld: warning multiple definitions of symbol _deflateCopy
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateCopy
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateCopy
ld: warning multiple definitions of symbol _deflateReset
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateReset
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateReset
ld: warning multiple definitions of symbol _deflateSetDictionary
/Library/Frameworks/R.framework/R(deflate.lo) definition of
_deflateSetDictionary
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateSetDictionary
ld: warning multiple definitions of symbol _deflateInit2_
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateInit2_
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateInit2_
ld: warning multiple definitions of symbol _deflateEnd
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateEnd
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateEnd
ld: warning multiple definitions of symbol _deflateParams
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateParams
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateParams
ld: warning multiple definitions of symbol _deflateInit_
/Library/Frameworks/R.framework/R(deflate.lo) definition of _deflateInit_
/usr/lib/libz.1.dylib(deflate.o) definition of _deflateInit_
ld: warning multiple definitions of symbol _zError
/Library/Frameworks/R.framework/R(zutil.lo) definition of _zError
/usr/lib/libz.1.dylib(zutil.o) definition of _zError
ld: warning multiple definitions of symbol _zlibVersion
/Library/Frameworks/R.framework/R(zutil.lo) definition of _zlibVersion
/usr/lib/libz.1.dylib(zutil.o) definition of _zlibVersion
ld: warning multiple definitions of symbol _inflateEnd
/Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateEnd
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateEnd
ld: warning multiple definitions of symbol _inflateSync
/Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateSync
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateSync
ld: warning multiple definitions of symbol _inflateSyncPoint
/Library/Frameworks/R.framework/R(inflate.lo) definition of
_inflateSyncPoint
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateSyncPoint
ld: warning multiple definitions of symbol _inflate
/Library/Frameworks/R.framework/R(inflate.lo) definition of _inflate
/usr/lib/libz.1.dylib(inflate.o) definition of _inflate
ld: warning multiple definitions of symbol _inflateSetDictionary
/Library/Frameworks/R.framework/R(inflate.lo) definition of
_inflateSetDictionary
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateSetDictionary
ld: warning multiple definitions of symbol _inflateInit2_
/Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateInit2_
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateInit2_
ld: warning multiple definitions of symbol _inflateReset
/Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateReset
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateReset
ld: warning multiple definitions of symbol _inflateInit_
/Library/Frameworks/R.framework/R(inflate.lo) definition of _inflateInit_
/usr/lib/libz.1.dylib(inflate.o) definition of _inflateInit_
ld: warning multiple definitions of symbol _adler32
/Library/Frameworks/R.framework/R(adler32.lo) definition of _adler32
/usr/lib/libz.1.dylib(adler32.o) definition of _adler32
ld: warning multiple definitions of symbol _BC
/Library/Frameworks/R.framework/Versions/2.0.1/Resources/lib/libreadline.4.
3.dylib(terminal.so) definition of _BC
/usr/lib/libncurses.5.dylib(lib_termcap.o) definition of _BC
ld: warning multiple definitions of symbol _UP
/Library/Frameworks/R.framework/Versions/2.0.1/Resources/lib/libreadline.4.
3.dylib(terminal.so) definition of _UP
/usr/lib/libncurses.5.dylib(lib_termcap.o) definition of _UP
ld: warning multiple definitions of symbol _PC
/Library/Frameworks/R.framework/Versions/2.0.1/Resources/lib/libreadline.4.
3.dylib(terminal.so) definition of _PC
/usr/lib/libncurses.5.dylib(lib_tputs.o) definition of _PC
ld: warning multiple definitions of symbol _gzeof
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzeof
/usr/lib/libz.1.dylib(gzio.o) definition of _gzeof
ld: warning multiple definitions of symbol _gzclose
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzclose
/usr/lib/libz.1.dylib(gzio.o) definition of _gzclose
ld: warning multiple definitions of symbol _gzdopen
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzdopen
/usr/lib/libz.1.dylib(gzio.o) definition of _gzdopen
ld: warning multiple definitions of symbol _gzerror
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzerror
/usr/lib/libz.1.dylib(gzio.o) definition of _gzerror
ld: warning multiple definitions of symbol _gzflush
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzflush
/usr/lib/libz.1.dylib(gzio.o) definition of _gzflush
ld: warning multiple definitions of symbol _gzgetc
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzgetc
/usr/lib/libz.1.dylib(gzio.o) definition of _gzgetc
ld: warning multiple definitions of symbol _gzgets
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzgets
/usr/lib/libz.1.dylib(gzio.o) definition of _gzgets
ld: warning multiple definitions of symbol _gzopen
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzopen
/usr/lib/libz.1.dylib(gzio.o) definition of _gzopen
ld: warning multiple definitions of symbol _gzprintf
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzprintf
/usr/lib/libz.1.dylib(gzio.o) definition of _gzprintf
ld: warning multiple definitions of symbol _gzputc
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzputc
/usr/lib/libz.1.dylib(gzio.o) definition of _gzputc
ld: warning multiple definitions of symbol _gzputs
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzputs
/usr/lib/libz.1.dylib(gzio.o) definition of _gzputs
ld: warning multiple definitions of symbol _gzread
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzread
/usr/lib/libz.1.dylib(gzio.o) definition of _gzread
ld: warning multiple definitions of symbol _gzrewind
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzrewind
/usr/lib/libz.1.dylib(gzio.o) definition of _gzrewind
ld: warning multiple definitions of symbol _gzseek
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzseek
/usr/lib/libz.1.dylib(gzio.o) definition of _gzseek
ld: warning multiple definitions of symbol _gzsetparams
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzsetparams
/usr/lib/libz.1.dylib(gzio.o) definition of _gzsetparams
ld: warning multiple definitions of symbol _gztell
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gztell
/usr/lib/libz.1.dylib(gzio.o) definition of _gztell
ld: warning multiple definitions of symbol _gzwrite
/Library/Frameworks/R.framework/R(gzio.lo) definition of _gzwrite
/usr/lib/libz.1.dylib(gzio.o) definition of _gzwrite
** R
** data
** demo
** help
>> Building/Updating help pages for package
'VGAM'
Formats: text html latex example
AA.Aa.aa text html latex example
AB.Ab.aB.ab text html latex example
AB.Ab.aB.ab2 text html latex example
ABO text html latex example
BratUC text html latex example
Coef.qrrvglm-class text html latex example
Coef.qrrvglm text html latex example
Coef.rrvglm-class text html latex example
Coef.rrvglm text html latex example
DagumUC text html latex example
FiskUC text html latex example
G1G2G3 text html latex example
InvlomaxUC text html latex example
InvparalogisticUC text html latex example
LognormalUC text html latex example
LomaxUC text html latex example
MNSs text html latex example
ParalogisticUC text html latex example
SinmadUC text html latex example
acat text html latex example
auuc text html latex example
beta2 text html latex example
betaII text html latex example
binom2.or text html latex example
binom2.rho text html latex example
binomialff text html latex example
biplot.rrvglm text html latex example
bminz text html latex example
brat text html latex example
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cdf.lmscreg text html latex example
cgo text html latex example
chest text html latex example
chisq text html latex example
cloglog text html latex example
coalminers text html latex example
cratio text html latex example
cumulative text html latex example
dagum text html latex example
deplot.lmscreg text html latex example
dhzeta text html latex example
dirichlet text html latex example
dzipois text html latex example
egev text html latex example
enzyme text html latex example
exponential text html latex example
fisherz text html latex example
fisk text html latex example
genbetaII text html latex example
genpoisson text html latex example
geometric text html latex example
get.smart text html latex example
get.smart.prediction text html latex example
gev text html latex example
gew text html latex example
gpd text html latex example
grc text html latex example
gumbel.block text html latex example
hspider text html latex example
hunua text html latex example
hzeta text html latex example
identity text html latex example
inverse text html latex example
invlomax text html latex example
invparalogistic text html latex example
lgammaff text html latex example
lms.bcg text html latex example
lms.bcn text html latex example
lms.yjn text html latex example
logc text html latex example
loge text html latex example
logff text html latex example
logit text html latex example
loglog text html latex example
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lvplot.qrrvglm text html latex example
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micmen text html latex example
multinomial text html latex example
negbin.mu text html latex example
normal1 text html latex example
ogev text html latex example
oxtemp text html latex example
paralogistic text html latex example
persp.qrrvglm text html latex example
plot.deplot.lmscreg text html latex example
plot.qrrvglm text html latex example
plot.qtplot.lmscreg text html latex example
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pneumo text html latex example
poissonff text html latex example
positive.binomial text html latex example
positive.poisson text html latex example
probit text html latex example
put.smart text html latex example
qrrvglm.control text html latex example
qtplot.lmscreg text html latex example
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rdiric text html latex example
rhobit text html latex example
rig text html latex example
rpospois text html latex example
rrar text html latex example
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s text html latex example
setup.smart text html latex example
simplex text html latex example
sinmad text html latex example
smart.expression text html latex example
smart.mode.is text html latex example
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sratio text html latex example
studentt text html latex example
tanl text html latex example
trplot.qrrvglm text html latex example
usagrain text html latex example
vcov.qrrvglm text html latex example
venice text html latex example
vgam-class text html latex example
vgam text html latex example
vgam.control text html latex example
vglm-class text html latex example
vglm text html latex example
vglm.control text html latex example
vglmff-class text html latex example
vsmooth.spline text html latex example
waitakere text html latex example
weibull text html latex example
wrapup.smart text html latex example
yip88 text html latex example
zipbipp text html latex example
zipoissonX text html latex example
* DONE (VGAM)
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